Publications of Eduardo D. Sontag jointly with N.S. Kumar
Conference articles
  1. M.A. Al-Radhawi, N.S. Kumar, E.D. Sontag, and D. Del Vecchio. Stochastic multistationarity in a model of the hematopoietic stem cell differentiation network. In Proc. 2018 IEEE Conf. Decision and Control, pages 1886-1892, 2018. [PDF] Keyword(s): multistability, biochemical networks, systems biology, stochastic systems, cell differentiation, multistationarity.
    In the mathematical modeling of cell differentiation, it is common to think of internal states of cells (quanfitied by activation levels of certain genes) as determining different cell types. We study here the "PU.1/GATA-1 circuit" that controls the development of mature blood cells from hematopoietic stem cells (HSCs). We introduce a rigorous chemical reaction network model of the PU.1/GATA-1 circuit, which incorporates current biological knowledge and find that the resulting ODE model of these biomolecular reactions is incapable of exhibiting multistability, contradicting the fact that differentiation networks have, by definition, alternative stable steady states. When considering instead the stochastic version of this chemical network, we analytically construct the stationary distribution, and are able to show that this distribution is indeed capable of admitting a multiplicity of modes. Finally, we study how a judicious choice of system parameters serves to bias the probabilities towards different stationary states. We remark that certain changes in system parameters can be physically implemented by a biological feedback mechanism; tuning this feedback gives extra degrees of freedom that allow one to assign higher likelihood to some cell types over others.



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Last modified: Mon Mar 18 12:24:41 2019
Author: sontag.

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