Laboratory for Control, Learning, and Systems Biology

Eduardo D. Sontag's Publications

655 publications, indexed by category, year, author, and keyword.

01

By category

Complete bibliography →

Books and proceedings (8)

Articles in journal or book chapters (408)

Conference articles (217)

Internal reports (20)

Miscellaneous (1)

02

By year

2026 · 2025 · 2024 · 2023 · 2022 · 2021 · 2020 · 2019 · 2018 · 2017 · 2016 · 2015 · 2014 · 2013 · 2012 · 2011 · 2010 · 2009 · 2008 · 2007 · 2006 · 2005 · 2004 · 2003 · 2002 · 2001 · 2000 · 1999 · 1998 · 1997 · 1996 · 1995 · 1994 · 1993 · 1992 · 1991 · 1990 · 1989 · 1988 · 1987 · 1986 · 1985 · 1984 · 1983 · 1982 · 1981 · 1980 · 1979 · 1978 · 1977 · 1976 · 1975 · 1972

03

By author

D.K. Agrawal (3)

A. Al'Khafaji (1)

M. Ali Al-Radhawi (31)

F. Albertini (16)

F. Allgower (1)

M.C. Altman (1)

Z. Aminzare (9)

A. C. Antoulas (1)

A. Arapostathis (1)

K. M. Aravind (1)

J.A. Ascensao (1)

R.H. Austin (1)

J. L. Balcázar (1)

J. Bassaganya-Riera (1)

P. Bastiaens (1)

Y. Benenson (2)

M.R. Bennett (1)

M. di Bernardo (3)

M. R. Birtwistle (1)

K.M. Blacklock (1)

F. Blanchini (1)

V.D. Blondel (1)

N. Bluthgen (1)

R.D. Braatz (1)

F. J. Bruggeman (2)

J. G. Chase (3)

G. Cipriani (1)

P.G. Cipriani (1)

F. H. Clarke (2)

N. Comandante-Lou (1)

C. Cosentino (1)

F. R. Cross (1)

M. A. Dahleh (2)

B. DasGupta (22)

S.N. Dashkovskiy (1)

N. Davidsohn (1)

A. Dayarian (1)

D. Densmore (1)

B.W. Dickinson (2)

R. J. Dinerstein (3)

M. J. Donahue (2)

D.V. Efimov (1)

H. El-Samad (1)

A.D. Ellington (1)

G.A. Enciso (10)

K. Erickson (1)

V.I. Fernandez (1)

A. Rufino Ferreira (2)

J. E. Ferrell (2)

J.E. Fitzgerald (2)

M. Marcondes de Freitas (3)

A. de la Fuente (1)

S. Gaglione (1)

K. E. Galloway (2)

R.A. Gatenby (1)

R. Gavaldà (1)

M.L. Gennaro (1)

T.T. Georgiou (2)

J.L. Gevertz (6)

G. Giordano (4)

L. Goentoro (1)

J.M Greene (11)

J. Gunawardena (1)

K. Gunsalus (2)

D.A. Hafler (1)

A. O. Hamadeh (4)

B. Hancioglu (1)

M. L. J. Hautus (4)

T.A. Henzinger (1)

N.E. Hernandez (1)

E. A. Hernandez-Vargas (3)

J. Hershberger (1)

J.P. Hespanha (5)

M.W. Hirsch (1)

P. Iglesias (2)

O.A. Igoshin (1)

B.P. Ingalls (12)

T. Jacobson (1)

B. Jakubczyk (4)

A.S. Jarrah (1)

D.D. Jatkar (4)

C.R. Johnson (1)

M.R. Jovanovi\'c (2)

M.A. Kaashoek (1)

A. Y. Katsov (1)

P.P. Khargonekar (2)

B. N. Kholodenko (4)

A. Kiyatkin (3)

C.A. Klausmeier (1)

S. Kleinstein (1)

M. Krichman (6)

M. D. Kvalheim (3)

G.A. Lafferriere (1)

R. Laubenbacher (1)

D.A. Lauffenburger (2)

D. Lauffenburger (1)

Y.S. Ledyaev (6)

P. de Leenheer (14)

P. De Leenheer (1)

P. de Leenheer (4)

N. E. Leonard (3)

D. Liberzon (7)

H. Logemann (1)

A. Macintyre (1)

B. de Freitas Magalhães (1)

M. Malisoff (6)

I.R. Manchester (1)

J. L. Mancilla-Aguilar (3)

N. Mansouri (1)

S. I. Marcus (1)

M. Margaliot (14)

R. Marshall (2)

A. Megretski (2)

J.H. Meldon (1)

F. Menolascina (2)

S. D. Merajver (1)

M. Mischiati (2)

A. S. Morse (3)

E. Munarriz (1)

R. M. Murray (2)

V. H. Nagaraj (1)

T. Natschläger (1)

E.V. Nikolaev (5)

A. J. Ninfa (3)

V. Noireaux (2)

A.C.B de Oliveira (13)

A. Oliveira (1)

A. C. B. de Oliveira (4)

A. Olshevsky (1)

J.P. Padmakumar (1)

E. Peterman (1)

E. Peterson (1)

J. Pettmann (1)

R.J. Plemmons (1)

J. R. Pomerening (1)

S. Prabakaran (1)

S. Prosperi (1)

P. E. M. Purnick (1)

M. Raginsky (1)

K. Rattanakorn (1)

D. Rebatchouk (1)

N.A.W. van Riel (1)

Y. Rouchaleau (3)

C. Sanchez-Tapia (3)

L. Scardovi (3)

G. Schnitger (2)

C.A. Schwartz (1)

R. Schwarzschild (3)

S.C. Sealfon (1)

T.H. Segall-Shapiro (2)

A. M. Sengupta (3)

H. T. Siegelmann (11)

G.S. Sivanathan (1)

M. Skataric (5)

S.P. Smriga (1)

E.D. Sontag (655)

P.K. Sorger (1)

D. Souivaine (1)

D.E. Stevenson (1)

A.I. Subbotin (2)

S. Subramanian (1)

P. Sudalagunta (1)

H.J. Sussmann (21)

C Hixahuary Sanchez Tapia (1)

S. Tripathi (1)

K. Tsaneva-Atanasova (1)

D. N. C. Tse (2)

J. N. Tsitsiklis (2)

W. Vasconcelos (1)

D. Del Vecchio (16)

D. Del Vecchio (2)

A. Veliz-Cuba (1)

A. C. Ventura (1)

P. Vera-Licona (1)

M. Vidyasagar (1)

V. Vinogradov (1)

Y. Vodovotz (1)

C. A. Voigt (6)

Zhong Han W.Z (1)

D.J. Waxman (2)

A.M. Weinstein (1)

K. Westbrooks (2)

H. V. Westerhoff (2)

K.P. Wilkie (1)

J.C. Willems (1)

A.L. Williams (2)

W. M. Wonham (1)

Y. Yamamoto (2)

T. Yankeelov (1)

D. Zeilberger (1)

A. Zelikovsky (2)

04

By keyword

accessibility (1)

active sensing (2)

adaptation (21)

adaptive anti-cancer therapy (1)

adaptive control (4)

adversarial attacks (2)

analog computing (7)

antifragility (1)

antithetic controller (3)

approximation theory (3)

artificial intelligence (69)

autoencoders (2)

B. subtilis (2)

Bi-layer membrane (1)

bifurcations (2)

bilinear systems (8)

biochemical systems (2)

biological adaptation (17)

biological systems (2)

biomolecular systems (1)

biomolecular systems; machine learning; nonlinear systems identification (1)

bispecific antibodies (2)

bistability (2)

Boolean circuit reduction (1)

boolean circuits (3)

Boolean functions (1)

boolean gates (2)

Boolean networks (1)

Boolean systems (5)

bounded inputs (18)

boundedness of solutions (2)

cancer heterogeneity (3)

cell differentiation (2)

cell signaling (4)

Cell-fate networks (1)

cell-free systems (1)

cellular signaling (2)

chaotic systems (1)

checkpoint inhibition (1)

chemical master equation (5)

chemical master equations (4)

chemical networks (1)

chemical reaction networks (2)

chemical rection networks (1)

chemoresistance (1)

chemotherapy (3)

circadian rhythms (2)

circulating tumor cells (2)

complex balanced (2)

complex balancing (1)

complex-balanced networks (2)

computation by cortical microcircuits (1)

computational complexity (17)

computational geometry (1)

consistent graphs (2)

continuous time (1)

contractions (22)

contractive systems (23)

contracts theory (2)

control barrier functions (1)

control oriented learning (1)

control-Lyapunov functions (18)

controllability (16)

cooperative systems (2)

coprime factorizations (1)

critical points (1)

CRN (2)

cumulative dose response (1)

cyclic feedback systems (4)

cyclophosphamide (1)

data-drive control (1)

data-driven control (1)

delay-differential systems (5)

detail balanced (2)

detectability (5)

differential geometry (1)

differential inclusions (2)

differential topology (1)

differentiation (1)

direct optimization (1)

discontinuous feedback (1)

discrete-time (12)

discrete-time systems (5)

dissipative systems (1)

distributed computation (1)

DNA barcoding (1)

DNA methylation (1)

dose response (3)

dose respose (1)

drug interactions (1)

drug resistance (4)

dynamic compensation (1)

dynamic response phenotypes (1)

dynamical systems (53)

dynamics of algorithms (24)

empirical risk minimization (1)

EMT (1)

encoding dynamics (1)

entrainment (6)

enzymatic circuits (1)

enzymatic cycles (2)

enzymatic networks (1)

epidemiology (8)

epigenetic regulation (1)

epigenetics (7)

Epithelial-Mesenchymal Transition (2)

fading memory (1)

fading-memory systems (2)

fcd (14)

feedback control (3)

feedback linearization (1)

feedback stabilization (20)

feedforward (15)

feedforward loops (6)

fold-change detection (22)

forced oscillations (2)

futile cycles (12)

gene and protein networks (12)

gene copy number (1)

gene expression (2)

gene networks (13)

gene regulation (1)

gene regulatory networks (2)

gene regulatory systems (1)

generalization bounds (1)

genetic circuits (1)

genetic regulatory networks (1)

Genetic regulatory systems (1)

global stability (3)

gradient descent (24)

gradient dominance (13)

gradient dynamics (17)

gradient flows (11)

gradient systems (19)

graph algorithms (6)

H-infinity control (1)

Hartman-Grobman Theorem (1)

heat conduction (1)

Heuristic logic minimizer (1)

Hidden Markov Models (2)

homeostasis (1)

hopf bifurcations (1)

hybrid systems (7)

identifiability (29)

identification (5)

IFFL (16)

iISS (12)

image processing (1)

immune recruitment (1)

immune system (1)

immunology (16)

immunotherapy (1)

in vitro synthetic biology (1)

incoherent feedforward loop (14)

incoherent feedforward loops (7)

incremental gains (1)

information-based complexity (2)

innovations (2)

input to output stability (7)

input-to-state stability (65)

input/output system representations (2)

integral feedback (9)

integral input to state stability (13)

internal model principle (10)

intratumor heterogeneity (1)

invariance principle (2)

Ising spin models (2)

ISS (37)

jump Markov processes (2)

kinetic proofreading (2)

Koopman embedding (2)

learning theory (1)

Lie algebra accessibility (1)

Lie algebras (1)

limit cycles (1)

linear quadratic regulator (1)

linear systems (2)

linear time-varying systems (1)

linearization (1)

liquid biopsy (2)

logarithmic norms (6)

logic optimization (1)

logic-circuit (1)

LQR (5)

Lyapunov functions (2)

machine learning (79)

MAPK cascades (14)

Markov Chains (1)

mass transfer resistance (1)

Master Equation (1)

mathematical biology (1)

mathematical model (1)

mathematical modeling (1)

mathematical models (1)

mathematical oncology (1)

matrix measures (6)

measurement noise (1)

mechanistic models (1)

methylation (1)

metronomic chemotherapy (1)

minimum phase (1)

model discrimination (1)

model reduction (1)

model-driven antibody design (1)

model-free control (1)

modular response analysis (6)

moduli spaces (1)

molecular biology (1)

monotone systems (57)

multiple myeloma (3)

multistability (12)

multistationarity (2)

network reconstruction (1)

network translation (1)

neural networks (75)

noise to state stability (3)

non-expansive systems (3)

non-holonomic systems (1)

noncommutative rings (1)

nonlinear control (21)

nonlinear dynamics (5)

nonlinear regulation (1)

nonlinear stability (46)

nonlinear system theory (1)

nonlinear systems (25)

Notch signaling (1)

numerical methods (18)

observability (37)

observables (4)

observation space (3)

oncolytic therapy (1)

optimal control (10)

optimal control theory (2)

optimal synthesis (1)

optimal therapy (1)

optimization (3)

optimization problems (1)

oscillations (6)

overparameterization (1)

overparametrization (3)

p53 (2)

parameter identification (2)

parametric classes of systems (18)

partial differential equations (4)

passive systems (5)

path-planning (3)

pattern formation (1)

perfect adaptation (16)

periodic behavior (2)

periodic behaviors (1)

periodic inputs (2)

persistence (4)

personalized therapy (1)

phenotypic plasticity (1)

phenotypic variation (3)

piecewise linear systems (2)

pluripotent cells (1)

pluripotent stem cell circuit (1)

Poincar\'{e}-Bendixson (1)

pole-shifting (1)

policy optimization (1)

polynomial systems (2)

population dynamics (1)

positive feedback systems (2)

positive systems (1)

probabilistic (1)

probability theory (1)

protease-based circuits (1)

protein networks (5)

quantitative systems pharmacology (1)

quasimetric spaces (1)

quorum sensing (2)

random dynamical systems (4)

reachability (1)

reaction cordinates (1)

reaction networks (108)

reaction networks with inputs (2)

reaction networks; cyclic feedback systems; secant condition;nonlinear stability; dynamical systems (3)

reaction networks; cyclic feedback systems; spatially distributed systems; secant condition (1)

reaction-diffusion PDEs (2)

real algebraic geometry (1)

real-analytic functions (21)

realization theory (20)

receptor-ligand models (1)

recurrent neural networks (26)

reinforcement learning (5)

resource competition (5)

resource constraints (1)

retroactivity (8)

reverse engineering (14)

RFM (9)

ribosome flow model (9)

robustness measures (2)

sampled-data systems (3)

satellite control (1)

saturation (19)

scale invariance (21)

search problems (1)

secant condition (6)

semianalytic sets (1)

signal transduction networks (5)

single-cell data (2)

singular controls (2)

singular perturbations (13)

singularities in optimization (1)

small-gain theorem (4)

stabilization (9)

state-affine systems (1)

stationary distribution (1)

statistical learning theory (1)

steepest descent (1)

stochastic systems (13)

stoichiometry (3)

structured uncertainty (2)

subanalytic sets (1)

subharmonic responses (2)

sufficient statistics (2)

super-Turing computation (4)

supermodular optimization (1)

switched systems (2)

symmetries (11)

synchronization (9)

synthetic biology (36)

system identification (4)

systems biology (174)

systems identification (9)

systems over rings (19)

systems without drift (3)

theory of computing (2)

theory of computing and complexity (8)

therapy resistance (3)

toggle switch (2)

toggle switches (1)

toric varieties (1)

traffic systems (1)

transcription (1)

transcription factors (1)

transcriptional networks (2)

transient behavior (14)

transient diffusion (1)

translation (1)

tridiagonal systems (6)

tSNE (1)

Turing instabilities (3)

UMAP (1)

universal formulas (1)

VC dimension (12)

virtual populations (1)

viscosity solutions (1)

visualization (1)

Volterra series (2)

weakly electric fish (1)

zero-deficiency networks (6)